RNA-seq of Riftia with endosymbiont - SRA

SRX11113656: RNA-seq of Riftia with endosymbiont
1 ILLUMINA (Illumina NovaSeq 6000) run: 31.2M spots, 2.8G bases, 942.7Mb downloads

Design: Libraries were made at the Broad Institute using a modified RNA-seq tag protocol whereby samples barcodes RNAs were pooled and depleted of rRNA using a Ribozero kit (Epicentre), and converted to cDNA using template switching with SMARTScribe (Clontech) and PCR amplification using primers whose 5 ends target the constant regions of the 3 or 5 adaptors and whose 3 ends contain the full Illumina P5 or P7 sequences.

Submitted by: Harvard University

Study: Gene expression profile of endosymbiont of Riftia pachyptila

PRJNA736714 • SRP323622 • All experiments • All runs

show Abstracthide Abstract

Riftia pachyptila were incubated under varying conditions at in-situ pressures. RNA was extracted from trophosome samples immediately after cessation of experiments. Raw data represents both the tubeworm host and the symbiont Candidatus Endoriftia persephone.

Sample: Riftia trophosome sample

SAMN19656893 • SRS9177644 • All experiments • All runs

Organism: Candidatus Endoriftia persephone

Library:

Name: 1294j

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: METATRANSCRIPTOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 31.2M spots, 2.8G bases, 942.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR14780328	31,153,038	2.8G	942.7Mb	2021-07-14

ID:: 14795193

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